PUBLICATIONS
* equal contributions, † co-corresponding author, ‡ consortium author
Albert Lin*, Runzhe Yang*, Sven Dorkenwald, Arie Matsliah, Amy R. Sterling, Philipp Schlegel, Szi-chieh Yu, Claire E. McKellar, Marta Costa, Katharina Eichler, Alexander Shakeel Bates, Nils Eckstein, Jan Funke, Gregory S.X.E. Jefferis, Mala Murthy. (2024). Network Statistics of the Whole-Brain Connectome of Drosophila. Nature 634, 153-165. doi: https://doi.org/10.1038/s41586-024-07968-y.
Preprint available on BioRxiv. doi: https://doi.org/10.1101/2023.07.29.551086.
Sven Dorkenwald, Arie Matsliah, Amy R. Sterling, Philipp Schlegel, Szi-chieh Yu, Claire E. McKellar, Albert Lin, Marta Costa, Katharina Eichler, Yijie Yin, Will Silversmith, Casey Schneider-Mizell, Chris S Jordan, Derrick Brittain, Akhilesh Halageri, Kai Kuehner, Oluwaseun Ogedengbe, Ryan Morey, Jay Gager, Krzysztof Kruk, Eric Perlman, Runzhe Yang, David Deutsch, Doug Bland, Marissa Sorek, Ran Lu, Thomas Macrina, Kisuk Lee, J. Alexander Bae, Shang Mu, Barak Nehoran, Eric Mitchell, Sergiy Popovych, Jingpeng Wu, Zhen Jia, Manuel Castro, Nico Kemnitz, Dodam Ih, Alexander Shakeel Bates, Nils Eckstein, Jan Funke, Forrest Collman, Davi D. Bock, Gregory S.X.E. Jefferis, H. Sebastian Seung, Mala Murthy, FlyWire Consortium. (2024). Neuronal wiring diagram of an adult brain. Nature 634, 124-138. doi: https://doi.org/10.1038/s41586-024-07558-y.
Preprint available on BioRxiv. doi: https://doi.org/10.1101/2023.06.27.546656.
Philipp Schlegel, Yijie Yin, Alexander Shakeel Bates, Sven Dorkenwald, Katharina Eichler, Paul Brooks, Daniel S. Han, Marina Gkantia, Marcia dos Santos, Eva J Munnelly, Griffin Badalamente, Laia Serratosa Capdevila, Varun Aniruddha Sane, Markus William Pleijzier, Imaan F.M. Tamimi, Christopher R. Dunne, Irene Salgarella, Alexandre Javier, Siqi Fang, Eric Perlman, Tom Kazimiers, Sridhar R. Jagannathan, Arie Matsliah, Amy R. Sterling, Szi-chieh Yu, Claire E. McKellar, FlyWire Consortium‡, Marta Costa, H. Sebastian Seung, Mala Murthy, Volker Hartenstein, Davi D. Bock, Gregory S.X.E. Jefferis. (2024). Whole-brain annotation and multi-connectome cell typing quantifies circuit stereotypy in Drosophila. Nature 634, 139-152. doi: https://doi.org/10.1038/s41586-024-07686-5.
Preprint available on BioRxiv. doi: https://doi.org/10.1101/2023.06.27.546055.
Manuel Schottdorf†, P. Dylan Rich, E. Mika Diamanti, Albert Lin, Sina Tafazoli, Edward H. Nieh, Stephan Y. Thiberge†. (2024). TWINKLE: An open-source two-photon microscope for teaching and research. BioRxiv. doi: https://doi.org/10.1101/2024.09.23.612766.
Bella E. Brezovec*, Andrew B. Berger*, Yukun A. Hao*, Albert Lin*, Osama M. Ahmed*, Diego A. Pacheco, Stephan Y. Thiberge, Mala Murthy†, Thomas R. Clandinin†. (2024). BIFROST: a method for registering diverse imaging datasets of the Drosophila brain. PNAS 121. doi: https://doi.org/10.1073/pnas.2322687121.
Preprint available on BioRxiv. doi: https://doi.org/10.1101/2023.06.09.544408.
Albert Lin†, Shanshan Qin, Helena Casademunt, Min Wu, Wesley Hung, Greg Cain, Nicolas Tan, Raymond Valenzuela, Leila Lesanpezeshki, Vivek Venkatachalam, Cengiz Pehlevan†, Mei Zhen†, Aravinthan D.T. Samuel†. (2023). Functional imaging and quantification of multi-neuronal olfactory responses in C. elegans. Science Advances 9. doi: https://doi.org/10.1126/sciadv.ade1249.
Preprint available on BioRxiv: https://doi.org/10.1101/2022.05.27.493772.
Albert Lin, Daniel Witvliet, Luis Hernandez-Nunez, Scott W. Linderman, Aravinthan D. T. Samuel, Vivek Venkatachalam. (2022). Imaging whole-brain activity to understand behaviour. Nature Reviews Physics 4, 292-305. doi: https://doi.org/10.1038/s42254-022-00430-w.
Lu Mi, Richard Xu, Sridhama Prakhya, Albert Lin, Nir Shavit, Aravinthan D. T. Samuel, Srinivas C Turaga. (2021). Connectome-constrained Latent Variable Model of Whole-Brain Neural Activity. International Conference on Learning Representations 2022. Link: https://openreview.net/forum?id=CJzi3dRlJE-.
Jodie A. Schiffer, Stephanie V. Stumbur, Maedeh Seyedolmohadesin, Yuyan Xu, William T. Serkin, Natalie G McGowan, Oluwatosin Banjo, Mahdi Torkashvand, Albert Lin, Ciara N. Hosea, Adrien Assié, Buck S. Samuel, Michael P. O’Donnell, Vivek Venkatachalam, Javier Apfeld. (2021). Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide. PLOS Pathogens 17, e1010112. doi: https://doi.org/10.1371/journal.ppat.1010112.
Preprint available on BioRxiv: https://doi.org/10.1101/2021.09.23.461430.
Eviatar Yemini†, Albert Lin†, Amin Nejatbakhsh, Erdem Varol, Ruoxi Sun, Gonzalo E. Mena, Aravinthan D.T. Samuel, Liam Paninski, Vivek Venkatachalam†, Oliver Hobert. (2021). NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans. Cell 184, 272-288. doi: https://doi.org/10.1016/j.cell.2020.12.012.
Preprint available on bioRxiv: https://doi.org/10.1101/676312.
Amin Nejatbakhsh, Erdem Verol, Eviatar Yemini, Vivek Venkatachalam, Albert Lin, Aravinthan D.T. Samuel, Oliver Hobert, Liam Paninski. (2020). Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization. International Conference on Medical Image Computing & Computer Assisted Intervention 2020, 14-24. doi: https://doi.org/10.1007/978-3-030-59722-1_2.
Preprint available on bioRxiv: https://doi.org/10.1101/2020.07.07.192120.
Hernan G. Garcia, Mikhail Tikhonov, Albert Lin, Thomas Gregor. (2013). Quantitative Imaging of Transcription in Living Drosophila Embryos Links Polymerase Activity to Patterning. Current Biology 23, 2140-2145. doi: https://doi.org/10.1016/j.cub.2013.08.054.
GRADUATE THESIS
Albert Lin, Mei Zhen, Cengiz Pehlevan, Aravinthan D.T. Samuel. (2021). Characterizing chemosensory responses of C. elegans with multi-neuronal imaging. Harvard University, Department of Physics.
UNDERGRADUATE THESIS
Albert Lin, Hernan G. Garcia, Thomas Gregor. (2015). Measuring Gene Expression Noise: A Window to the Molecular Mechanisms of Transcription. Princeton University, Department of Physics.